Services - Morphometry

Adds intracellular structure to mass cytometry by detecting marker localization within each cell, revealing spatial patterns often missed by centroid-based methods

Morphometry Suite™

Beyond expression.
Discover the structure, spatial dynamics, and cellular interactions behind every signal

Traditional mass cytometry captures how much of a marker is present. But it misses where — and how — that signal behaves inside and between cells.

Morphometry™ Suite changes that by decoding full ion cloud shapes to unlock spatial and structural insights — at the single-cell level.

What You Can Discover

• Intracellular compartmentalization — pinpoint where within the cell markers localize
• Morphological parameters — analyze shape, spread, and symmetry of ion clouds
• Cell–cell interactions — detect conjugates, synapses,and physical proximity events
• ADCC and cytotoxicity assays — profile antibody-dependent killing based on target-effector cell binding
• Morphological panels — use our validated stain sets optimized for spatial mapping

How it works

01 Standard acquisition

Your sample is acquired on a standard mass cytometry instrument

02 Morphological analysis

Ion clouds are processed withour proprietary spatial and morphological algorithms

03 Spatial insights output

Output includes spatial features,cell morphology metrics, and interpreted interactions

Applications Include

• Immuno-oncology studies (e.g., NK or T cell-mediated killing)
• High-resolution phenotyping of immune synapses
• Subcellular marker trafficking and localization assays
• QC of therapeutic antibody binding and localization
• Advanced panel design with spatial-aware readouts

Want to reach out to us?

Contact us at sales@scidentify.com or request a demo to see your data in higher resolution.
Get Free Demo

Trusted by researchers worldwide to bring
consistency and depth to immune data.

We use SCIDENTIFY tech to develop internal standards for our state-of-the-art optical process. Their ability to access information in the ion cloud is unprecedented.

Prof. Dr. Sara Skrabalak
Director CSENND, Indiana University, Bloomington | Editor-in-Chief, Chemistry of Materials

SCIDENTIFYs morphological parameters enhance the accuracy of downstream clustering algorithms.

Dr. Christoph SCHwärzler
Mass cytometry specialist, EPFL | Ex-Novartis

We use SCIDENTIFY services to improve our fluorescent nanoparticle product-line. They have provided us such a deep-understanding of our system. Amazing!

Lars dähne
CEO, Surflay Nanotec GmbH